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Category: chemistry

At the conference, Science History Institute postdoctoral researcher Megan Piorko presented a curious manuscript belonging to English alchemists John Dee (1527–1608) and his son Arthur Dee (1579–1651). In the pre-modern world, alchemy was a means to understand nature through ancient secret knowledge and chemical experiment.

Within Dee’s alchemical manuscript was a cipher table, followed by encrypted ciphertext under the heading “Hermeticae Philosophiae medulla”—or Marrow of the Hermetic Philosophy. The table would end up being a valuable tool in decrypting the cipher, but could only be interpreted correctly once the hidden “key” was found.

It was during post-conference drinks in a dimly lit bar that Megan decided to investigate the mysterious alchemical cipher—with the help of her colleague, University of Graz postdoctoral researcher Sarah Lang.

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An international team of space researchers working with NASA’s Goddard Space Flight Center has found previously unknown organic molecules on Mars using a new experiment aboard the Curiosity rover. The results are published in the journal Nature Astronomy.

To date, NASA has sent nine orbiters and six rovers to Mars, in part to learn more about the possibility of extraterrestrial life. To that end, the planet has been photographed with various types of cameras. More recently, rovers have dug down into the Martian soil to collect samples for analysis. The goal of such work is to learn more about the chemicals in the soil on or near the surface, but more specifically, to see if it contains organic molecules. If so, they could be evidence of life or prior life on the planet. The rovers have found organic molecules, but samples were not sufficient to claim they were produced or used by a living organism. Thus, the search continues. In this new effort, after the Curiosity rover’s drill stopped working in 2,017 the control team chose to conduct a type of experiment that had not been done by the rover before.

Curiosity carries an instrument called the Sample Analysis at Mars, an array of cups that hold samples of soil as they are being analyzed. The array has 74 cups—all but nine of them are empty most of the time. The other nine hold chemicals that are used to conduct other kinds of experiments. Because of the drill malfunction, the team at NASA chose to drop into the cups containing the chemicals and then to analyze the chemicals released due to reactions. The researchers found in the that had never been seen on Mars before. While the new experiment did not find evidence of life, it did show that there are other novel ways to test for it on Mars and other planets.

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An international team of scientists from Austria and Germany has launched a new paradigm in magnetism and superconductivity, putting effects of curvature, topology, and 3D geometry into the spotlight of next-decade research. The results are published in Advanced Materials.

Traditionally, the primary field in which curvature plays a pivotal role is the theory of general relativity. In recent years, however, the impact of curvilinear geometry has entered various disciplines, ranging from solid-state physics to soft-matter physics to chemistry and biology; and giving rise to a plethora of emerging domains, such as curvilinear cell biology, semiconductors, superfluidity, optics, plasmonics and 2D van der Waals materials. In modern magnetism, superconductivity and , extending nanostructures into the has become a major research avenue because of geometry-, curvature-and topology-induced phenomena. This approach provides a means to improve conventional functionalities and to launch novel functionalities by tailoring the curvature and 3D shape.

“In recent years, there have appeared experimental and theoretical works dealing with curvilinear and three-dimensional superconducting and (anti-)ferromagnetic nano-architectures. However, these studies originate from different scientific communities, resulting in the lack of knowledge transfer between such fundamental areas of condensed matter physics as magnetism and superconductivity,” says Oleksandr Dobrovolskiy, head of the SuperSpin Lab at the University of Vienna. “In our group, we lead projects in both these topical areas and it was the aim of our perspective article to build a ‘bridge’ between the magnetism and superconductivity communities, drawing attention to the conceptual aspects of how extension of structures into the third dimension and curvilinear geometry can modify existing and aid launching novel functionalities upon solid-state systems.”

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A new analytical technique is able to provide hitherto unattainable insights into the extremely rapid dynamics of biomolecules. The team of developers, led by Abbas Ourmazd from the University of Wisconsin–Milwaukee and Robin Santra from DESY, is presenting its clever combination of quantum physics and molecular biology in the scientific journal Nature. The scientists used the technique to track the way in which the photoactive yellow protein (PYP) undergoes changes in its structure in less than a trillionth of a second after being excited by light.

“In order to precisely understand biochemical processes in nature, such as photosynthesis in certain bacteria, it is important to know the detailed sequence of events,” Santra says. “When light strikes photoactive proteins, their spatial structure is altered, and this structural change determines what role a protein takes on in nature.”

Until now, however, it has been almost impossible to track the exact sequence in which structural changes occur. Only the initial and final states of a molecule before and after a reaction can be determined and interpreted in theoretical terms. “But we don’t know exactly how the energy and shape changes in between the two,” says Santra. “It’s like seeing that someone has folded their hands, but you can’t see them interlacing their fingers to do so.”

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Coacervate droplets (CDs) are a model for protocells formed by liquid-liquid phase separation (LLPS), but protocell models able to proliferate remain undeveloped. Here, the authors report a proliferating peptide-based CD using synthesised amino acid thioesters as monomers, which could concentrate RNA and lipids, enabling RNA to protect the droplet from dissolution by lipids.

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It’s the dog days of summer. You bite down on a plump, chilled orange. Citrus juice explodes in your mouth in a refreshing, tingling burst. Ahh.

And congratulations—you’ve just been vaccinated for the latest virus.

That’s one of the goals of molecular farming, a vision to have plants synthesize medications and vaccines. Using genetic engineering and synthetic biology, scientists can introduce brand new biochemical pathways into plant cells—or even whole plants—essentially turning them into single-use bioreactors.

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I wonder how general this is. Interesting application of AI.

Electric vehicles have the potential to substantially reduce carbon emissions, but car companies are running out of materials to make batteries. One crucial component, nickel, is projected to cause supply shortages as early as the end of this year. Scientists recently discovered four new materials that could potentially help—and what may be even more intriguing is how they found these materials: the researchers relied on artificial intelligence to pick out useful chemicals from a list of more than 300 options. And they are not the only humans turning to A.I. for scientific inspiration.

Creating hypotheses has long been a purely human domain. Now, though, scientists are beginning to ask machine learning to produce original insights. They are designing neural networks (a type of machine-learning setup with a structure inspired by the human brain) that suggest new hypotheses based on patterns the networks find in data instead of relying on human assumptions. Many fields may soon turn to the muse of machine learning in an attempt to speed up the scientific process and reduce human biases.

In the case of new battery materials, scientists pursuing such tasks have typically relied on database search tools, modeling and their own intuition about chemicals to pick out useful compounds. Instead a team at the University of Liverpool in England used machine learning to streamline the creative process. The researchers developed a neural network that ranked chemical combinations by how likely they were to result in a useful new material. Then the scientists used these rankings to guide their experiments in the laboratory. They identified four promising candidates for battery materials without having to test everything on their list, saving them months of trial and error.

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The Mayo Foundation Institutional Review Board (IRB) approved the study. All patients gave written informed consent to have their medical records reviewed and samples analyzed according to IRB requirements and federal regulations. Patients were eligible for this retrospective study if they: were diagnosed with AL amyloidosis between January 2000 and May 2015; were classified as amyloidosis complete hematologic response by immunofixation electrophoresis (IFE), serum free light chain (FLC) by consensus criteria;6,7 had a negative bone marrow by six-color flow cytometry; and had both a stored research sample prior to starting a line of therapy and a repeat sample while in complete hematologic response. The diagnosis of amyloidosis was made by Congo red with green birefringence under polarized light; the typing of the amyloid was with immunohistochemical stains or proteomics8,9. Supplementary Figure 1 is a consort diagram illustrating patient selection. Median time from institution of therapy to complete response (CR) sample was 18 months (interquartile range 9.1, 20 months).

The serum IFE (SIFE), urine IFE (UIFE), FLC, and bone marrow measurements were done as part of routine clinical practice as previously described4,5. Urine samples were concentrated to a maximum of 200× to achieve final concentrations of urine protein between 20 and 80 g/L4,5. The FLC assay (Freelite™, The Binding Site Ltd.) was performed on a Siemens BNII nephelometer10, and an abnormal FLC result was defined as an abnormal FLC κ/λ ratio. Bone marrow clonality was determined by six-color flow cytometry11. This method has sensitivity of ~10−4 to 10−5.

For MASS-FIX, immunoglobulins were enriched from serum using camelid-derived nanobodies directed against the heavy-chain constant domains of IgG, IgA, and IgM or the light-chain constant domains of κ and λ (Thermo Fisher Scientific)4,5. The +1 and +2 charge states of the light chains and heavy chains were measured by configuring the mass spectrometer to analyze ions between an m/z of 9000–32,000 Da.

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While analyzing some of the world’s oldest colored gemstones, researchers from the University of Waterloo discovered carbon residue that was once ancient life, encased in a 2.5 billion-year-old ruby.

The research team, led by Chris Yakymchuk, professor of Earth and Environmental Sciences at Waterloo, set out to study the geology of rubies to better understand the conditions necessary for ruby formation. During this research in Greenland, which contains the oldest known deposits of rubies in the world, the team found a ruby sample that contained graphite, a mineral made of pure carbon. Analysis of this carbon indicates that it is a remnant of early life.

“The graphite inside this ruby is really unique. It’s the first time we’ve seen evidence of ancient life in ruby-bearing rocks,” says Yakymchuk. “The presence of graphite also gives us more clues to determine how rubies formed at this location, something that is impossible to do directly based on a ruby’s color and chemical composition.”

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Nuclear energy is becoming more popular by the day and is being considered an eco-friendly option for the energy crisis we are going through. The US Department of Energy has dedicated US$20 million to a project that is based in Arizona that will use nuclear energy to make green hydrogen. They will be testing its capability as a liquid backup battery and as a secondary product for nuclear power installations.

The project will be headed by PNW Hydrogen LLC. They will build hydrogen production plants on-site at the Palo Verde Nuclear Generating Station in Phoenix, Arizona. Storage tanks will be used that will be able to store six tonnes of hydrogen onsite, representing about 200 MWh of energy that can be converted back into electricity and given to the grid when demand is more than usual.

The hydrogen will also be “used to make chemicals and other fuels,” and the project will gauge how nuclear stations can export and sell extra energy as an extra revenue stream. It is said that in the future, baseline power providers like nuclear stations will only be needed when the sun’s not shining or the wind’s not blowing. Hence, it makes sense to use this technology to make use of it and produce energy in the downtime.

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